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    MBD13 methyl-CPG-binding domain protein 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835299, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MBD13
    Official Full Name
    methyl-CPG-binding domain protein 13
    Primary source
    TAIR:AT5G52230
    Locus tag
    AT5G52230
    See related
    Araport:AT5G52230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17P19.13; F17P19_13; methyl-CPG-binding domain protein 13
    Summary
    Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
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    Genomic context

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    See MBD13 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (21207784..21212072, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GTP-binding protein 1 Neighboring gene chromosome transmission fidelity-like protein Neighboring gene membrane steroid binding protein 1 Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins. Zemach A, et al. Plant J, 2003 Jun. PMID 12787239
    2. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203591.2
    NM_001344990.1
    NM_124602.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables methyl-CpG binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    methyl-CPG-binding domain protein 13
    NP_001190520.1
    • methyl-CPG-binding domain protein 13 (MBD13); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739).
    NP_200036.1
    • methyl-CPG-binding domain protein 13 (MBD13); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 6509 Blast hits to 4943 proteins in 596 species: Archae - 10; Bacteria - 822; Metazoa - 2790; Fungi - 554; Plants - 296; Viruses - 34; Other Eukaryotes - 2003 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21207784..21212072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124602.4 → NP_200036.1  methyl-CPG-binding domain protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200036.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WLQ6, Q8L791, Q9LTJ8
      UniProtKB/TrEMBL
      A0A178UJM8, A0A5S9YEF0

    2. NM_001344990.1 → NP_001331264.1  methyl-CPG-binding domain protein 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WLQ6, Q8L791, Q9LTJ8
      UniProtKB/TrEMBL
      A0A178UJM8, A0A5S9YEF0

    3. NM_001203591.2 → NP_001190520.1  methyl-CPG-binding domain protein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190520.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WLQ6, Q8L791, Q9LTJ8
      UniProtKB/TrEMBL
      A0A178UJM8, A0A5S9YEF0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTJ8.1

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