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Links from Protein Clusters

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    SEC7-like guanine nucleotide exchange family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829976, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SEC7-like guanine nucleotide exchange family protein
    Primary source
    TAIR:AT4G38200
    Locus tag
    AT4G38200
    See related
    Araport:AT4G38200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D10.320; F20D10_320
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (17915206..17922732)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene FAR1-related sequence 5 Neighboring gene ncRNA Neighboring gene cellulose synthase like D4 Neighboring gene ncRNA Neighboring gene expansin A20 Neighboring gene tubulin-tyrosine ligase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342484.1
    NM_119981.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of ARF protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SEC7-like guanine nucleotide exchange family protein
    NP_195533.2
    • SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT4G35380.1); Has 2912 Blast hits to 2618 proteins in 244 species: Archae - 0; Bacteria - 32; Metazoa - 1541; Fungi - 604; Plants - 295; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17915206..17922732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119981.4 → NP_195533.2  SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195533.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JSZ5, Q0WUF1, Q9SZM0
      UniProtKB/TrEMBL
      A0A178UXZ2, A0A5S9XZN8, A0A654FWK4
      Conserved Domains (1) summary
      PLN03076
      Location:11 → 1685
      PLN03076; ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

    2. NM_001342484.1 → NP_001328040.1  SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3G5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JSZ5.1

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