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Links from Protein Clusters

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    BRH1 brassinosteroid-responsive RING-H2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825319, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BRH1
    Official Full Name
    brassinosteroid-responsive RING-H2
    Primary source
    TAIR:AT3G61460
    Locus tag
    AT3G61460
    See related
    Araport:AT3G61460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    brassinosteroid-responsive RING-H2
    Summary
    Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
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    Genomic context

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    See BRH1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (22741511..22742772, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cysteine synthase C1 Neighboring gene syntaxin of plants 73 Neighboring gene photosystem I light harvesting complex protein Neighboring gene Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Wang X, et al. Sci China Life Sci, 2018 Jan. PMID 28887625
    2. Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana. Molnár G, et al. Planta, 2002 May. PMID 12012249
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_116011.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in brassinosteroid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of leaf morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of plant organ morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to brassinosteroid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to brassinosteroid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to chitin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    brassinosteroid-responsive RING-H2
    NP_191705.1
    • brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22741511..22742772 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116011.2 → NP_191705.1  brassinosteroid-responsive RING-H2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191705.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VCF4, Q9XF92
      UniProtKB/TrEMBL
      A0A384KKT2, A0A5S9XMV1
      Conserved Domains (2) summary
      PHA02926
      Location:51 → 140
      PHA02926; zinc finger-like protein; Provisional
      cd16448
      Location:94 → 137
      RING-H2; H2 subclass of RING (RING-H2) finger and its variants
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XF92.1

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