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    RING/U-box protein with C6HC-type zinc finger [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823695, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box protein with C6HC-type zinc finger
    Primary source
    TAIR:AT3G45540
    Locus tag
    AT3G45540
    See related
    Araport:AT3G45540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (16706312..16707649, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene RING/U-box protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box protein with C6HC-type zinc finger
    NP_190140.1
    • RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2900 Blast hits to 2879 proteins in 213 species: Archae - 0; Bacteria - 2; Metazoa - 1213; Fungi - 549; Plants - 696; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16706312..16707649 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114423.1 → NP_190140.1  RING/U-box protein with C6HC-type zinc finger [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190140.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XI86, Q9M1F3
      Conserved Domains (2) summary
      smart00647
      Location:168 → 235
      IBR; In Between Ring fingers
      pfam01485
      Location:253 → 296
      IBR; IBR domain, a half RING-finger domain

    2. NM_001339210.1 → NP_001325919.1  RING/U-box protein with C6HC-type zinc finger [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMP3
    Nucleotide Protein
    Heading Accession and Version

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