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Links from Protein Clusters

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    GTP-binding protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821969, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GTP-binding protein-like protein
    Primary source
    TAIR:AT3G23860
    Locus tag
    AT3G23860
    See related
    Araport:AT3G23860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (8616804..8619285, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein 4 Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene magnesium transporter NIPA (DUF803) Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene topoisomerase II

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis GPR1 Gene Negatively Affects Pollen Germination, Pollen Tube Growth, and Gametophyte Senescence. Yang X, et al. Int J Mol Sci, 2017 Jun 21. PMID 28635622, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338656.1
    NM_001338657.1
    NM_113291.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen exine formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GTP-binding protein-like protein
    NP_189028.1
    • GTP-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 385 Blast hits to 385 proteins in 205 species: Archae - 2; Bacteria - 0; Metazoa - 127; Fungi - 131; Plants - 51; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8616804..8619285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113291.2 → NP_189028.1  GTP-binding protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189028.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EN16, F4J5A2
      Conserved Domains (1) summary
      COG1084
      Location:2 → 165
      Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]

    2. NM_001338656.1 → NP_001327822.1  GTP-binding protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCH9, Q9LIS0
      Conserved Domains (1) summary
      COG1084
      Location:15 → 178
      Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]

    3. NM_001338657.1 → NP_001327821.1  GTP-binding protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCH9, Q9LIS0
      Conserved Domains (1) summary
      COG1084
      Location:15 → 178
      Nog1; GTP-binding protein, GTP1/Obg family [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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