U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein Clusters

    • Showing Current items.

    Myb/SANT-like DNA-binding domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817035, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Myb/SANT-like DNA-binding domain protein
    Primary source
    TAIR:AT2G24960
    Locus tag
    AT2G24960
    See related
    Araport:AT2G24960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27C12.12; F27C12_12
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (10617116..10620034)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF239) Neighboring gene spindle/kinetochore-associated protein Neighboring gene Proline-rich extensin-like family protein Neighboring gene Serine/threonine-protein kinase Rio1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001124909.2
    NM_128054.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Myb/SANT-like DNA-binding domain protein
    NP_001118381.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_180068.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10617116..10620034
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124909.2 → NP_001118381.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118381.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X0Y0, A0A654EXH8, B3H6H6
      Conserved Domains (1) summary
      pfam12776
      Location:327 → 420
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    2. NM_128054.1 → NP_180068.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180068.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVJ6, Q9SK37
      Conserved Domains (1) summary
      pfam12776
      Location:327 → 420
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.