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    nonsense-mediated mRNA decay-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817971, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nonsense-mediated mRNA decay-like protein
    Primary source
    TAIR:AT2G34100
    Locus tag
    AT2G34100
    See related
    Araport:AT2G34100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T14G11.22; T14G11_22
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (14399534..14413489, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Cysteine proteinases superfamily protein Neighboring gene ncRNA Neighboring gene maternal effect embryo arrest 18 Neighboring gene Cytochrome C oxidase polypeptide VIB family protein Neighboring gene Cysteine-rich protein Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene SCAR family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001161078.1
    NM_128961.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nonsense-mediated mRNA decay-like protein
    NP_001154550.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 10185 Blast hits to 4535 proteins in 413 species: Archae - 41; Bacteria - 4951; Metazoa - 1579; Fungi - 1007; Plants - 277; Viruses - 100; Other Eukaryotes - 2230 (source: NCBI BLink).
    NP_180957.2
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14399534..14413489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161078.1 → NP_001154550.1  nonsense-mediated mRNA decay-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154550.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWS2, A0A654EYP2, Q84RJ7

    2. NM_128961.3 → NP_180957.2  nonsense-mediated mRNA decay-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180957.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWS2, A0A654EYP2, Q84RJ7
    Nucleotide Protein
    Heading Accession and Version

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