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    SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 [ Myotis davidii ]

    Gene ID: 102768331, updated on 30-Mar-2024

    Summary

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    Gene symbol
    SPECC1
    Gene description
    sperm antigen with calponin homology and coiled-coil domains 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Myotis davidii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
    Orthologs
    human mouse all
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    Genomic context

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    See SPECC1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    101 current ASM32734v1 (GCF_000327345.1) Unplaced Scaffold NW_006383019.1 (555765..828820, complement)

    NW_006383019.1Genomic Context describing neighboring genes Neighboring gene UPF0711 protein C18orf21 homolog pseudogene Neighboring gene adenosine A2b receptor Neighboring gene uncharacterized LOC107181740 Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene A-kinase anchoring protein 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006383019.1 Unplaced Scaffold Reference ASM32734v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of filamentous actin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytospin-B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Myotis davidii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM32734v1

    Genomic

    1. NW_006383019.1 Reference ASM32734v1

      Range
      555765..828820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015558364.1 → XP_015413850.1  cytospin-B isoform X3

      Conserved Domains (3) summary
      cd00014
      Location:990 → 1090
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cl02488
      Location:366 → 526
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:633 → 728
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    2. XM_015558363.1 → XP_015413849.1  cytospin-B isoform X3

      Conserved Domains (3) summary
      cd00014
      Location:990 → 1090
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cl02488
      Location:366 → 526
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:633 → 728
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    3. XM_015558365.1 → XP_015413851.1  cytospin-B isoform X3

      Conserved Domains (3) summary
      cd00014
      Location:990 → 1090
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cl02488
      Location:366 → 526
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:633 → 728
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    4. XM_015558361.1 → XP_015413847.1  cytospin-B isoform X1

      Conserved Domains (3) summary
      cd00014
      Location:1020 → 1120
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cl02488
      Location:396 → 556
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:663 → 758
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    5. XM_006779289.2 → XP_006779352.2  cytospin-B isoform X4

      Conserved Domains (3) summary
      cd00014
      Location:983 → 1083
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cl02488
      Location:396 → 556
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:663 → 758
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    6. XM_015558369.1 → XP_015413855.1  cytospin-B isoform X7

      Conserved Domains (3) summary
      cd00014
      Location:933 → 1033
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cl02488
      Location:309 → 469
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:576 → 671
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    7. XM_015558370.1 → XP_015413856.1  cytospin-B isoform X7

      Conserved Domains (3) summary
      cd00014
      Location:933 → 1033
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cl02488
      Location:309 → 469
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:576 → 671
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    8. XM_015558367.1 → XP_015413853.1  cytospin-B isoform X5

      Conserved Domains (2) summary
      cl02488
      Location:396 → 556
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:663 → 758
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    9. XM_015558362.1 → XP_015413848.1  cytospin-B isoform X2

      Conserved Domains (3) summary
      cd00014
      Location:1020 → 1093
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      cl02488
      Location:396 → 556
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:663 → 758
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    10. XM_015558368.1 → XP_015413854.1  cytospin-B isoform X6

      Conserved Domains (2) summary
      cl02488
      Location:396 → 556
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl09111
      Location:663 → 758
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    11. XM_015558371.1 → XP_015413857.1  cytospin-B isoform X8

      Conserved Domains (2) summary
      pfam15035
      Location:489 → 590
      Rootletin; Ciliary rootlet component, centrosome cohesion
      cl02488
      Location:396 → 556
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    12. XM_006779291.2 → XP_006779354.2  cytospin-B isoform X10

      Conserved Domains (1) summary
      pfam15035
      Location:489 → 590
      Rootletin; Ciliary rootlet component, centrosome cohesion

    13. XM_006779290.2 → XP_006779353.2  cytospin-B isoform X9

      Conserved Domains (1) summary
      pfam15035
      Location:489 → 590
      Rootletin; Ciliary rootlet component, centrosome cohesion

    RNA

    1. XR_001512445.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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