U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    TRAF4 TNF receptor associated factor 4 [ Macaca fascicularis (crab-eating macaque) ]

    Gene ID: 102146475, updated on 11-Jun-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    TRAF4
    Gene description
    TNF receptor associated factor 4
    See related
    Ensembl:ENSMFAG00000036809
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca fascicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TRAF4 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 16 NC_088390.1 (34215982..34222033)
    102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 16 NC_052270.1 (52650223..52656269)

    Chromosome 16 - NC_088390.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z17 Neighboring gene ribosomal protein L23a Neighboring gene TLC domain containing 1 Neighboring gene NIMA related kinase 8 Neighboring gene family with sequence similarity 222 member B Neighboring gene uncharacterized LOC135967835 Neighboring gene Era like 12S mitochondrial rRNA chaperone 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cynomolgus monkey testicular cDNAs for discovery of novel human genes in the human genome sequence. Osada N, et al. BMC Genomics, 2002 Dec 23. PMID 12498619, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in activation of NF-kappaB-inducing kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of JNK cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    TNF receptor-associated factor 4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference T2T-MFA8v1.0

    Genomic

    1. NC_088390.1 Reference T2T-MFA8v1.0

      Range
      34215982..34222033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005583270.4 → XP_005583327.1  TNF receptor-associated factor 4 isoform X1

      See identical proteins and their annotated locations for XP_005583327.1

      UniProtKB/TrEMBL
      A0A2K5W360, G7PTY5
      Related
      ENSMFAP00000031511.1
      Conserved Domains (4) summary
      PLN03086
      Location:113 → 211
      PLN03086; PRLI-interacting factor K; Provisional
      cd03781
      Location:308 → 463
      MATH_TRAF4; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter ...
      pfam02176
      Location:210 → 269
      zf-TRAF; TRAF-type zinc finger
      cd16641
      Location:15 → 59
      mRING-HC-C3HC3D_TRAF4; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 4 (TRAF4) and similar proteins

    2. XM_015438072.3 → XP_015293558.1  TNF receptor-associated factor 4 isoform X2

      UniProtKB/TrEMBL
      G7PTY5
      Conserved Domains (3) summary
      cd00162
      Location:18 → 55
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cd03781
      Location:292 → 447
      MATH_TRAF4; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter ...
      pfam02176
      Location:102 → 156
      zf-TRAF; TRAF-type zinc finger
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.