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    PAXIP1 PAX interacting protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 420441, updated on 17-Aug-2024

    Summary

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    Symbol
    PAXIP1provided by CGNC
    Full Name
    PAX interacting protein 1provided by CGNC
    Primary source
    CGNC:4765
    See related
    Ensembl:ENSGALG00010025243
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PAXIP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (7682687..7715624, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (7686481..7719447, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene dipeptidyl peptidase like 6 Neighboring gene uncharacterized LOC121110084 Neighboring gene uncharacterized LOC112531935 Neighboring gene uncharacterized LOC101752304 Neighboring gene 5-hydroxytryptamine receptor 5A Neighboring gene uncharacterized LOC107052501

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of transcription initiation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PAX-interacting protein 1
    Names
    PAX interacting (with transcription-activation domain) protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      7682687..7715624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015281216.4 → XP_015136702.1  PAX-interacting protein 1

      UniProtKB/TrEMBL
      A0A8V0ZWU2
      Related
      ENSGALP00010038052.1, ENSGALT00010061611.1
      Conserved Domains (3) summary
      smart00292
      Location:974 → 1056
      BRCT; breast cancer carboxy-terminal domain
      cd00027
      Location:872 → 938
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
      pfam12738
      Location:714 → 775
      PTCB-BRCT; twin BRCT domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      7686481..7719447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040665749.2 → XP_040521683.1  PAX-interacting protein 1

      UniProtKB/TrEMBL
      A0A8V0ZWU2
      Conserved Domains (6) summary
      cd17710
      Location:101 → 180
      BRCT_PAXIP1_rpt2; second BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
      cd17711
      Location:612 → 693
      BRCT_PAXIP1_rpt3; third BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
      cd17712
      Location:869 → 943
      BRCT_PAXIP1_rpt5; fifth BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
      cd17714
      Location:15 → 89
      BRCT_PAXIP1_rpt1; first (N-terminal) BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
      cd17730
      Location:713 → 785
      BRCT_PAXIP1_rpt4; fourth BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
      cd18440
      Location:975 → 1065
      BRCT_PAXIP1_rpt6; sixth BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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