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    PATL1 PAT1 homolog 1, processing body mRNA decay factor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699207, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PATL1provided by VGNC
    Official Full Name
    PAT1 homolog 1, processing body mRNA decay factorprovided by VGNC
    Primary source
    VGNC:VGNC:75684
    See related
    Ensembl:ENSMMUG00000017287
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PATL1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (14322627..14355818)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (14418298..14451485)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene syntaxin 3 Neighboring gene olfactory receptor 10V1 Neighboring gene uncharacterized LOC106993228 Neighboring gene oxysterol binding protein Neighboring gene transfer RNA phenylalanine (anticodon GAA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in P-body assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PAT1 homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      14322627..14355818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001089844.4 → XP_001089844.1  protein PAT1 homolog 1 isoform X2

      See identical proteins and their annotated locations for XP_001089844.1

      UniProtKB/TrEMBL
      A0A5F7ZUV1, G7ND54
      Related
      ENSMMUP00000068415.1, ENSMMUT00000084032.1
      Conserved Domains (1) summary
      pfam09770
      Location:396 → 613
      PAT1; Topoisomerase II-associated protein PAT1

    2. XM_015114085.2 → XP_014969571.1  protein PAT1 homolog 1 isoform X1

      UniProtKB/TrEMBL
      F7HUF8
      Related
      ENSMMUP00000022745.3, ENSMMUT00000024302.4
      Conserved Domains (1) summary
      cl25764
      Location:420 → 637
      PAT1; Topoisomerase II-associated protein PAT1
    Nucleotide Protein
    Heading Accession and Version

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