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    CARF calcium responsive transcription factor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704415, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CARFprovided by VGNC
    Official Full Name
    calcium responsive transcription factorprovided by VGNC
    Primary source
    VGNC:VGNC:70518
    See related
    Ensembl:ENSMMUG00000006418
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CARF in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (90282043..90369347)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (84574795..84662195)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene islet cell autoantigen 1 like Neighboring gene keratin, type II cytoskeletal 8 pseudogene Neighboring gene WD repeat domain 12 Neighboring gene UPF0729 protein C18orf32 homolog pseudogene Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene neurobeachin like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-responsive transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      90282043..90369347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015110688.2 → XP_014966174.1  calcium-responsive transcription factor isoform X1

      UniProtKB/TrEMBL
      F7HUH6
      Conserved Domains (1) summary
      pfam15299
      Location:253 → 483
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    2. XM_015110692.2 → XP_014966178.1  calcium-responsive transcription factor isoform X2

      UniProtKB/TrEMBL
      F7HUH6
      Conserved Domains (1) summary
      pfam15299
      Location:253 → 457
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    3. XM_015110689.2 → XP_014966175.1  calcium-responsive transcription factor isoform X1

      UniProtKB/TrEMBL
      F7HUH6
      Related
      ENSMMUP00000008457.4, ENSMMUT00000008998.4
      Conserved Domains (1) summary
      pfam15299
      Location:253 → 483
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    4. XM_015110690.2 → XP_014966176.1  calcium-responsive transcription factor isoform X1

      UniProtKB/TrEMBL
      F7HUH6
      Conserved Domains (1) summary
      pfam15299
      Location:253 → 483
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    5. XM_028830994.1 → XP_028686827.1  calcium-responsive transcription factor isoform X4

      Conserved Domains (1) summary
      pfam15299
      Location:1 → 139
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    6. XM_028830991.1 → XP_028686824.1  calcium-responsive transcription factor isoform X3

      UniProtKB/TrEMBL
      F7HUH6
      Conserved Domains (1) summary
      pfam15299
      Location:149 → 381
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    7. XM_028830992.1 → XP_028686825.1  calcium-responsive transcription factor isoform X3

      UniProtKB/TrEMBL
      F7HUH6
      Conserved Domains (1) summary
      pfam15299
      Location:149 → 381
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    RNA

    1. XR_001438712.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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