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    CALU calumenin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699730, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CALUprovided by VGNC
    Official Full Name
    calumeninprovided by VGNC
    Primary source
    VGNC:VGNC:70520
    See related
    Ensembl:ENSMMUG00000009616
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CALU in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (154984308..155017602)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (154781003..154814313)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene U7 small nuclear RNA Neighboring gene golgi associated RAB2 interactor 1B Neighboring gene opsin 1, short wave sensitive Neighboring gene transfer RNA proline (anticodon AGG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calumenin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260801.1 → NP_001247730.1  calumenin precursor

      See identical proteins and their annotated locations for NP_001247730.1

      Status: PROVISIONAL

      Source sequence(s)
      JU320008
      UniProtKB/TrEMBL
      H9EN05
      Related
      ENSMMUP00000066698.1, ENSMMUT00000103625.1
      Conserved Domains (1) summary
      cd16228
      Location:37 → 299
      EFh_CREC_Calumenin; EF-hand, calcium binding motif, found in calumenin

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      154984308..155017602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015134811.2 → XP_014990297.1  calumenin isoform X1

      UniProtKB/TrEMBL
      A0A1D5R3Z1, A0A1D5R5Q3, F6ZZ64
      Related
      ENSMMUP00000055641.2, ENSMMUT00000067681.2
      Conserved Domains (1) summary
      cd16228
      Location:37 → 299
      EFh_CREC_Calumenin; EF-hand, calcium binding motif, found in calumenin
    Nucleotide Protein
    Heading Accession and Version

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