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    PHTF1 putative homeodomain transcription factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707208, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PHTF1provided by VGNC
    Official Full Name
    putative homeodomain transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:75982
    Locus tag
    EGK_01110
    See related
    Ensembl:ENSMMUG00000017819
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PHTF1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (110464311..110526316)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (114722105..114791424, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107000335 Neighboring gene protein tyrosine phosphatase non-receptor type 22 Neighboring gene round spermatid basic protein 1 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 3 Neighboring gene uncharacterized LOC114678107

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative homeodomain transcription factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      110464311..110526316
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015148585.2 → XP_015004071.1  putative homeodomain transcription factor 1 isoform X1

      UniProtKB/TrEMBL
      G7MII9, H9EUD2
      Conserved Domains (1) summary
      pfam12129
      Location:5 → 151
      Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

    2. XM_028830310.1 → XP_028686143.1  putative homeodomain transcription factor 1 isoform X2

      UniProtKB/TrEMBL
      F7DWA4
      Related
      ENSMMUP00000023426.4, ENSMMUT00000025041.4
      Conserved Domains (1) summary
      pfam12129
      Location:1 → 109
      Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

    3. XM_001109827.4 → XP_001109827.1  putative homeodomain transcription factor 1 isoform X1

      See identical proteins and their annotated locations for XP_001109827.1

      UniProtKB/TrEMBL
      G7MII9, H9EUD2
      Conserved Domains (1) summary
      pfam12129
      Location:5 → 151
      Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

    4. XM_015148603.2 → XP_015004089.1  putative homeodomain transcription factor 1 isoform X3

      UniProtKB/TrEMBL
      F7H7M0, F7H7M2, H9EUD2
      Related
      ENSMMUP00000039378.3, ENSMMUT00000046336.3
      Conserved Domains (1) summary
      pfam12129
      Location:5 → 149
      Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

    5. XM_028830311.1 → XP_028686144.1  putative homeodomain transcription factor 1 isoform X4

      UniProtKB/TrEMBL
      H9EUD2
      Conserved Domains (1) summary
      pfam12129
      Location:5 → 151
      Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

    6. XM_028830312.1 → XP_028686145.1  putative homeodomain transcription factor 1 isoform X5

      UniProtKB/TrEMBL
      F7DWA4
      Conserved Domains (1) summary
      pfam12129
      Location:3 → 33
      Phtf-FEM1B_bdg; Male germ-cell putative homeodomain transcription factor

    7. XM_028830313.1 → XP_028686146.1  putative homeodomain transcription factor 1 isoform X6

    Nucleotide Protein
    Heading Accession and Version

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