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    shrprbck1r sharpin and rbck1 related [ Poecilia mexicana ]

    Gene ID: 106919742, updated on 13-Mar-2024

    Summary

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    Gene symbol
    shrprbck1r
    Gene description
    sharpin and rbck1 related
    See related
    Ensembl:ENSPMEG00000006877
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Poecilia mexicana
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
    Orthologs
    zebrafish all
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    Genomic context

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    See shrprbck1r in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094887.1 (52578..63525)

    NW_015094887.1Genomic Context describing neighboring genes Neighboring gene prolactin releasing hormone 2 Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene 5-oxoprolinase, ATP-hydrolysing Neighboring gene forkhead box H1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015094887.1 Unplaced Scaffold Reference P_mexicana-1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein linear polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of LUBAC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ranBP-type and C3HC4-type zinc finger-containing protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P_mexicana-1.0

    Genomic

    1. NW_015094887.1 Reference P_mexicana-1.0

      Range
      52578..63525
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014990296.1 → XP_014845782.1  ranBP-type and C3HC4-type zinc finger-containing protein 1-like

      UniProtKB/TrEMBL
      A0A3B3WRT4
      Related
      ENSPMEP00000005490.1, ENSPMET00000007428.1
      Conserved Domains (5) summary
      smart00547
      Location:392 → 413
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:392 → 411
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam13639
      Location:476 → 505
      zf-RING_2; Ring finger domain
      pfam16764
      Location:32 → 151
      Sharpin_PH; Sharpin PH domain
      cl00155
      Location:225 → 298
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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