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    TRPC4 transient receptor potential cation channel subfamily C member 4 [ Calidris pugnax (ruff) ]

    Gene ID: 106902620, updated on 3-Aug-2024

    Summary

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    Gene symbol
    TRPC4
    Gene description
    transient receptor potential cation channel subfamily C member 4
    See related
    Ensembl:ENSCPUG00000013196
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calidris pugnax
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
    Orthologs
    human mouse all
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    Genomic context

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    See TRPC4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015094510.1 (18896328..19051127)

    NW_015094510.1Genomic Context describing neighboring genes Neighboring gene FRAS1 related extracellular matrix 2 Neighboring gene ubiquitin fold modifier 1 Neighboring gene periostin Neighboring gene uncharacterized LOC106902423

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015094510.1 Unplaced Scaffold Reference ASM143184v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol 1,4,5 trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cation channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short transient receptor potential channel 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM143184v1

    Genomic

    1. NW_015094510.1 Reference ASM143184v1

      Range
      18896328..19051127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014966259.1 → XP_014821745.1  short transient receptor potential channel 4

      Related
      ENSCPUP00000019125.1, ENSCPUT00000022715.1
      Conserved Domains (4) summary
      cd00204
      Location:39 → 168
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:17 → 749
      trp; transient-receptor-potential calcium channel protein
      pfam08344
      Location:176 → 235
      TRP_2; Transient receptor ion channel II
      sd00045
      Location:122 → 167
      ANK; ANK repeat [structural motif]

    2. XM_014966260.1 → XP_014821746.1  short transient receptor potential channel 4

      Conserved Domains (4) summary
      cd00204
      Location:39 → 168
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:17 → 749
      trp; transient-receptor-potential calcium channel protein
      pfam08344
      Location:176 → 235
      TRP_2; Transient receptor ion channel II
      sd00045
      Location:122 → 167
      ANK; ANK repeat [structural motif]

    3. XM_014966258.1 → XP_014821744.1  short transient receptor potential channel 4

      Related
      ENSCPUP00000019124.1, ENSCPUT00000022714.1
      Conserved Domains (4) summary
      cd00204
      Location:39 → 168
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:17 → 749
      trp; transient-receptor-potential calcium channel protein
      pfam08344
      Location:176 → 235
      TRP_2; Transient receptor ion channel II
      sd00045
      Location:122 → 167
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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