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    L3MBTL1 L3MBTL histone methyl-lysine binding protein 1 [ Calidris pugnax (ruff) ]

    Gene ID: 106885397, updated on 3-Aug-2024

    Summary

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    Gene symbol
    L3MBTL1
    Gene description
    L3MBTL histone methyl-lysine binding protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calidris pugnax
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
    Orthologs
    human mouse all
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    Genomic context

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    See L3MBTL1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090802.1 (30947..64291, complement)

    NW_015090802.1Genomic Context describing neighboring genes Neighboring gene sacsin-like Neighboring gene immunoglobulin superfamily member 1-like Neighboring gene immunoglobulin superfamily member 1-like Neighboring gene serine and arginine rich splicing factor 6 Neighboring gene erythrocyte membrane protein band 4.1 like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_015090802.1 Unplaced Scaffold Reference ASM143184v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lethal(3)malignant brain tumor-like protein 1
    Names
    L3MBTL1, histone methyl-lysine binding protein
    l(3)mbt-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM143184v1

    Genomic

    1. NW_015090802.1 Reference ASM143184v1

      Range
      30947..64291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014937563.1 → XP_014793049.1  lethal(3)malignant brain tumor-like protein 1 isoform X2

      Conserved Domains (4) summary
      cd09582
      Location:768 → 833
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00454
      Location:768 → 834
      SAM; Sterile alpha motif
      smart00561
      Location:514 → 606
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam01530
      Location:642 → 668
      zf-C2HC; Zinc finger, C2HC type

    2. XM_014937562.1 → XP_014793048.1  lethal(3)malignant brain tumor-like protein 1 isoform X1

      Conserved Domains (4) summary
      cd09582
      Location:771 → 836
      SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
      smart00454
      Location:771 → 837
      SAM; Sterile alpha motif
      smart00561
      Location:517 → 609
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam01530
      Location:645 → 671
      zf-C2HC; Zinc finger, C2HC type
    Nucleotide Protein
    Heading Accession and Version

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