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    Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101701075, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Plod3
    Gene description
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
    See related
    Ensembl:ENSHGLG00000016800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    See Plod3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624740.1 (16074027..16082139)

    NW_004624740.1Genomic Context describing neighboring genes Neighboring gene claudin 15 Neighboring gene zinc finger HIT-type containing 1 Neighboring gene monoacylglycerol O-acyltransferase 3 Neighboring gene uncharacterized LOC106008984

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624740 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-lysine 5-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624740.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      16074027..16082139
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004840144.3 → XP_004840201.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

      UniProtKB/TrEMBL
      A0A0P6JF80, G5AXC0
      Related
      ENSHGLP00000023557.1, ENSHGLT00000023774.1
      Conserved Domains (1) summary
      smart00702
      Location:576 → 739
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein
    Heading Accession and Version

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