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    LOC102378759 transcription factor COE1-like [ Alligator sinensis (Chinese alligator) ]

    Gene ID: 102378759, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC102378759
    Gene description
    transcription factor COE1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
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    Genomic context

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    See LOC102378759 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005843509.1 (25675..61989, complement)

    NW_005843509.1Genomic Context describing neighboring genes Neighboring gene RING finger protein 145-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005843509 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor COE1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM45574v1 Primary Assembly

    Genomic

    1. NW_005843509.1 Reference ASM45574v1 Primary Assembly

      Range
      25675..61989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014527428.1 → XP_014382914.1  transcription factor COE1-like

      UniProtKB/TrEMBL
      A0A1U8DYY4
      Conserved Domains (3) summary
      cd01175
      Location:247 → 331
      IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
      pfam16422
      Location:13 → 239
      COE1_DBD; Transcription factor COE1 DNA-binding domain
      pfam16423
      Location:332 → 361
      COE1_HLH; Transcription factor COE1 helix-loop-helix domain
    Nucleotide Protein
    Heading Accession and Version

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