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    LOC100842798 serine/threonine-protein kinase 16 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100842798, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100842798
    Gene description
    serine/threonine-protein kinase 16
    Locus tag
    BRADI_4g29220v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100842798 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (34529457..34535998, complement)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (34711442..34717960, complement)

    Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106866765 Neighboring gene uncharacterized LOC112268805 Neighboring gene uncharacterized LOC100843303 Neighboring gene putative F-box protein At2g02030

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      34529457..34535998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010239820.3 → XP_010238122.1  serine/threonine-protein kinase 16 isoform X1

      UniProtKB/TrEMBL
      A0A0Q3HPP9, I1IPS3
      Conserved Domains (2) summary
      smart00220
      Location:28 → 326
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd13986
      Location:27 → 330
      STKc_16; Catalytic domain of Serine/Threonine Kinase 16

    2. XM_010239821.3 → XP_010238123.1  serine/threonine-protein kinase 16 isoform X2

      UniProtKB/TrEMBL
      A0A0Q3HPP9, I1IPS4
      Conserved Domains (2) summary
      smart00220
      Location:28 → 323
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd13986
      Location:27 → 327
      STKc_16; Catalytic domain of Serine/Threonine Kinase 16
    Nucleotide Protein Strain
    Heading Accession and Version

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