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    RP1L1 RP1 like 1 [ Pseudopodoces humilis (Tibetan ground-tit) ]

    Gene ID: 102107796, updated on 3-Aug-2024

    Summary

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    Gene symbol
    RP1L1
    Gene description
    RP1 like 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pseudopodoces humilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Pseudopodoces
    Orthologs
    human mouse all
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    Genomic context

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    See RP1L1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current PseHum1.0 (GCF_000331425.1) Unplaced Scaffold NW_005087605.1 (3202993..3228492)

    NW_005087605.1Genomic Context describing neighboring genes Neighboring gene PIN2 (TERF1) interacting telomerase inhibitor 1 Neighboring gene SRY-box transcription factor 7 Neighboring gene serine protease 55 Neighboring gene methionine sulfoxide reductase A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005087605.1 Unplaced Scaffold Reference PseHum1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in axoneme assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photoreceptor cell development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retina development in camera-type eye IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinitis pigmentosa 1-like 1 protein
    Names
    retinitis pigmentosa 1 like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pseudopodoces humilis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PseHum1.0 Primary Assembly

    Genomic

    1. NW_005087605.1 Reference PseHum1.0 Primary Assembly

      Range
      3202993..3228492
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014257625.1 → XP_014113100.1  retinitis pigmentosa 1-like 1 protein

      Conserved Domains (1) summary
      cd01617
      Location:37 → 115
      DCX; Ubiquitin-like domain of DCX
    Nucleotide Protein
    Heading Accession and Version

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