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    LOC106368595 ADP-ribosylation factor 1 [ Brassica napus (rape) ]

    Gene ID: 106368595, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106368595
    Gene description
    ADP-ribosylation factor 1
    Locus tag
    HID58_036040
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC106368595 in Genome Data Viewer
    Location:
    chromosome: A9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) A9 NC_063442.1 (38644862..38646381, complement)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A9 NC_027765.2 (38011049..38012568, complement)

    Chromosome A9 - NC_063442.1Genomic Context describing neighboring genes Neighboring gene peroxidase 18 Neighboring gene eukaryotic translation initiation factor 3 subunit B Neighboring gene protein GLUTAMINE DUMPER 4-like Neighboring gene uncharacterized LOC111198671

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ADP-ribosylation factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063442.1 Reference Da-Ae Primary Assembly

      Range
      38644862..38646381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013808591.3 → XP_013664045.1  ADP-ribosylation factor 1

      UniProtKB/TrEMBL
      A0A078HAM9, A0A078HEF7
      Conserved Domains (1) summary
      cd04151
      Location:19 → 176
      Arl1; ADP ribosylation factor 1 (Arf1)
    Nucleotide Protein
    Heading Accession and Version

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