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    LOC11430659 WD repeat-containing protein 20 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11430659, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11430659
    Gene description
    WD repeat-containing protein 20
    Locus tag
    MtrunA17_Chr7g0264021
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11430659 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (47636295..47642904)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (40795196..40801881)

    Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene dnaJ protein P58IPK homolog Neighboring gene fasciclin-like arabinogalactan protein 11 Neighboring gene uncharacterized LOC11431884 Neighboring gene probable E3 ubiquitin-protein ligase LOG2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WD repeat-containing protein 20
    Names
    putative transcription factor WD40-like family
    transducin/WD-like repeat-protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      47636295..47642904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024770541.2 → XP_024626309.1  WD repeat-containing protein 20 isoform X1

      UniProtKB/TrEMBL
      A0A0C3WDY3, A0A396H5B0, G7L2S1
      Conserved Domains (3) summary
      COG2319
      Location:145 → 377
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:241 → 283
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:308 → 523
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_003625570.4 → XP_003625618.2  WD repeat-containing protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A0C3WDY4, G7L2S2
      Conserved Domains (3) summary
      COG2319
      Location:145 → 412
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:241 → 283
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:308 → 396
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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