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    LOC25500079 ELMO domain-containing protein B [ Medicago truncatula (barrel medic) ]

    Gene ID: 25500079, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC25500079
    Gene description
    ELMO domain-containing protein B
    Locus tag
    MtrunA17_Chr8g0335681
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25500079 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (1194407..1201131)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (1334473..1341229)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC25500077 Neighboring gene uncharacterized LOC25500078 Neighboring gene SKP1-like protein 20 Neighboring gene SKP1-like protein 21 Neighboring gene SKP1-like protein 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
    2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ELMO domain-containing protein B
    Names
    ELMO/CED-12 family protein
    putative ELMO domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      1194407..1201131
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013588402.3 → XP_013443856.1  ELMO domain-containing protein B isoform X1

      UniProtKB/TrEMBL
      A0A072TL29, A0A072TM38
      Conserved Domains (1) summary
      pfam04727
      Location:68 → 228
      ELMO_CED12; ELMO/CED-12 family

    2. XM_013588405.3 → XP_013443859.1  ELMO domain-containing protein B isoform X3

      UniProtKB/TrEMBL
      A0A072TK45, A0A072TM38
      Conserved Domains (1) summary
      pfam04727
      Location:69 → 228
      ELMO_CED12; ELMO/CED-12 family

    3. XM_013588406.3 → XP_013443860.1  ELMO domain-containing protein B isoform X2

      UniProtKB/TrEMBL
      A0A072TM38, A0A072TWK6
      Conserved Domains (1) summary
      pfam04727
      Location:64 → 223
      ELMO_CED12; ELMO/CED-12 family

    RNA

    1. XR_003008025.2 RNA Sequence

    2. XR_005643534.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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