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    LOC106175903 T-box transcription factor TBX1-like [ Lingula anatina ]

    Gene ID: 106175903, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106175903
    Gene description
    T-box transcription factor TBX1-like
    See related
    EnsemblRapid:LOC106175903
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106175903 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775669.1 (889830..907824, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013580530.1 (768540..786534, complement)

    NW_019775669.1Genomic Context describing neighboring genes Neighboring gene AFG1-like ATPase Neighboring gene mucin-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-box transcription factor TBX1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775669.1 Reference LinAna2.0 Primary Assembly

      Range
      889830..907824 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013558058.1 → XP_013413512.1  T-box transcription factor TBX1-like

      UniProtKB/TrEMBL
      A0A1S3JT48
      Related
      XP_013413512.1, XM_013558058.1
      Conserved Domains (1) summary
      cd00182
      Location:145 → 335
      TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
    Nucleotide Protein
    Heading Accession and Version

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