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    LOC106161611 poly(rC)-binding protein 3 [ Lingula anatina ]

    Gene ID: 106161611, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106161611
    Gene description
    poly(rC)-binding protein 3
    See related
    EnsemblRapid:LOC106161611
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106161611 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775902.1 (174121..296321, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013577977.1 (174124..296321, complement)

    NW_019775902.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106161616 Neighboring gene zinc finger protein 830 Neighboring gene uncharacterized LOC106161598 Neighboring gene molybdenum cofactor sulfurase-like Neighboring gene uncharacterized LOC106161599

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    poly(rC)-binding protein 2; poly(rC)-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775902.1 Reference LinAna2.0 Primary Assembly

      Range
      174121..296321 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013538629.2 → XP_013394083.1  poly(rC)-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A1S3I7A6
      Related
      XP_013394083.1, XM_013538629.2
      Conserved Domains (2) summary
      cd00105
      Location:352 → 414
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

    2. XM_013538621.2 → XP_013394075.1  poly(rC)-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3I723
      Related
      XP_013394075.1, XM_013538621.2
      Conserved Domains (2) summary
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:398 → 461
      KH_1; KH domain

    3. XM_013538625.2 → XP_013394079.1  poly(rC)-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3I723
      Related
      XP_013394079.1, XM_013538625.2
      Conserved Domains (2) summary
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:398 → 461
      KH_1; KH domain

    4. XM_013538627.2 → XP_013394081.1  poly(rC)-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3I723
      Related
      XP_013394081.1, XM_013538627.2
      Conserved Domains (2) summary
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:398 → 461
      KH_1; KH domain

    5. XM_013538622.2 → XP_013394076.1  poly(rC)-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3I723
      Related
      XP_013394076.1, XM_013538622.2
      Conserved Domains (2) summary
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:398 → 461
      KH_1; KH domain

    6. XM_013538626.2 → XP_013394080.1  poly(rC)-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3I723
      Related
      XP_013394080.1, XM_013538626.2
      Conserved Domains (2) summary
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:398 → 461
      KH_1; KH domain

    7. XM_024074191.1 → XP_023929959.1  poly(rC)-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3I723
      Related
      XP_023929959.1, XM_024074191.1
      Conserved Domains (2) summary
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:398 → 461
      KH_1; KH domain

    8. XM_013538623.2 → XP_013394077.1  poly(rC)-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3I723
      Related
      XP_013394077.1, XM_013538623.2
      Conserved Domains (2) summary
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:398 → 461
      KH_1; KH domain

    9. XM_013538628.2 → XP_013394082.1  poly(rC)-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3I723
      Related
      XP_013394082.1, XM_013538628.2
      Conserved Domains (2) summary
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
      pfam00013
      Location:398 → 461
      KH_1; KH domain

    10. XM_013538632.2 → XP_013394086.1  poly(rC)-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A1S3I8A0
      Related
      XP_013394086.1, XM_013538632.2
      Conserved Domains (2) summary
      cd00105
      Location:304 → 366
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

    11. XM_013538630.2 → XP_013394084.1  poly(rC)-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A1S3I9L6
      Related
      XP_013394084.1, XM_013538630.2
      Conserved Domains (2) summary
      cd00105
      Location:350 → 412
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

    12. XM_013538631.2 → XP_013394085.1  poly(rC)-binding protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A1S3I732
      Related
      XP_013394085.1, XM_013538631.2
      Conserved Domains (2) summary
      cd00105
      Location:398 → 460
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      cd02396
      Location:124 → 188
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
    Nucleotide Protein
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