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    LOC106058096 polypeptide N-acetylgalactosaminyltransferase 2-like [ Biomphalaria glabrata ]

    Gene ID: 106058096, updated on 26-Mar-2024

    Summary

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    Gene symbol
    LOC106058096
    Gene description
    polypeptide N-acetylgalactosaminyltransferase 2-like
    See related
    VectorBase:BGLAX_041270; EnsemblRapid:ENSHHTG00000038671
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Biomphalaria glabrata
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Panpulmonata; Hygrophila; Lymnaeoidea; Planorbidae; Biomphalaria
    Also known as
    GalNAc-T; ppGalNAcT; pp-GaNTase
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    Genomic context

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    See LOC106058096 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_05 current xgBioGlab47.1 (GCF_947242115.1) 3 NC_074713.1 (12160952..12221692, complement)
    100 previous assembly ASM45736v1 (GCF_000457365.1) Unplaced Scaffold NW_013199454.1 (73758..104730, complement)

    Chromosome 3 - NC_074713.1Genomic Context describing neighboring genes Neighboring gene carboxypeptidase T-like Neighboring gene pecanex-like protein 4 Neighboring gene bifunctional protein GlmU-like Neighboring gene uncharacterized LOC106073299

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polypeptide N-acetylgalactosaminyltransferase
    Names
    Polypeptide GalNAc transferase
    Protein-UDP acetylgalactosaminyltransferase
    UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase
    UDP-N-acetyl-galactosamine:polypeptide N-acetylgalactosaminyltransferase
    NP_001298210.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001311281.1 → NP_001298210.1  polypeptide N-acetylgalactosaminyltransferase

      Status: PROVISIONAL

      Source sequence(s)
      KC182513
      UniProtKB/Swiss-Prot
      S5S833
      UniProtKB/TrEMBL
      A0A2C9LFP0
      Related
      ENSHHTP00000049857.1, ENSHHTT00000075176.1
      Conserved Domains (5) summary
      cd02510
      Location:167 → 462
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      COG0463
      Location:162 → 354
      WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
      COG4884
      Location:43 → 114
      YfeS; Uncharacterized conserved protein YfeS, contains WGR domain [Function unknown]
      cd00161
      Location:484 → 594
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
      pfam00652
      Location:474 → 592
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    RefSeqs of Annotated Genomes: GCF_947242115.1-RS_2023_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference xgBioGlab47.1

    Genomic

    1. NC_074713.1 Reference xgBioGlab47.1

      Range
      12160952..12221692 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    S5S833.1 GenPept UniProtKB/Swiss-Prot:S5S833

    Gene LinkOut

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    Molecular Biology Databases