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    pcm1 pericentriolar material 1 [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100702819, updated on 8-Mar-2024

    Summary

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    Gene symbol
    pcm1
    Gene description
    pericentriolar material 1
    See related
    Ensembl:ENSONIG00000010148
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Orthologs
    human zebrafish all
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    Genomic context

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    See pcm1 in Genome Data Viewer
    Location:
    chromosome: LG6
    Exon count:
    42
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG6 NC_031971.2 (14817747..14839571, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG6 NC_031971.1 (28365946..28387772)

    Linkage Group LG6 - NC_031971.2Genomic Context describing neighboring genes Neighboring gene FSHD region gene 1 Neighboring gene N-acylsphingosine amidohydrolase (acid ceramidase) 1b Neighboring gene oxysterol-binding protein 1 Neighboring gene spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in centrosome cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intraciliary transport involved in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule anchoring at centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centriolar satellite IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centriole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pericentriolar material 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031971.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      14817747..14839571 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013274109.3 → XP_013129563.1  pericentriolar material 1 protein isoform X1

      UniProtKB/TrEMBL
      I3JV65
      Conserved Domains (1) summary
      pfam15717
      Location:1483 → 2092
      PCM1_C; Pericentriolar material 1 C terminus

    2. XM_019360084.2 → XP_019215629.1  pericentriolar material 1 protein isoform X5

      UniProtKB/TrEMBL
      A0A669E9Z3
      Related
      ENSONIP00000069613.1, ENSONIT00000093108.1
      Conserved Domains (1) summary
      pfam15717
      Location:1483 → 2037
      PCM1_C; Pericentriolar material 1 C terminus

    3. XM_013274113.3 → XP_013129567.1  pericentriolar material 1 protein isoform X2

      UniProtKB/TrEMBL
      I3JV64, I3JV65
      Related
      ENSONIP00000012759.1, ENSONIT00000012769.2
      Conserved Domains (1) summary
      pfam15717
      Location:1482 → 2091
      PCM1_C; Pericentriolar material 1 C terminus

    4. XM_025907673.1 → XP_025763458.1  pericentriolar material 1 protein isoform X3

      UniProtKB/TrEMBL
      I3JV65
      Conserved Domains (1) summary
      pfam15717
      Location:1466 → 2075
      PCM1_C; Pericentriolar material 1 C terminus

    5. XM_013274115.3 → XP_013129569.1  pericentriolar material 1 protein isoform X4

      UniProtKB/TrEMBL
      I3JV65
      Related
      ENSONIP00000012760.2, ENSONIT00000012770.2
      Conserved Domains (1) summary
      pfam15717
      Location:1464 → 2073
      PCM1_C; Pericentriolar material 1 C terminus

    6. XM_013274107.3 → XP_013129561.1  pericentriolar material 1 protein isoform X1

      UniProtKB/TrEMBL
      I3JV65
      Conserved Domains (1) summary
      pfam15717
      Location:1483 → 2092
      PCM1_C; Pericentriolar material 1 C terminus

    7. XM_013274108.3 → XP_013129562.1  pericentriolar material 1 protein isoform X1

      UniProtKB/TrEMBL
      I3JV65
      Conserved Domains (1) summary
      pfam15717
      Location:1483 → 2092
      PCM1_C; Pericentriolar material 1 C terminus

    8. XM_013274111.3 → XP_013129565.1  pericentriolar material 1 protein isoform X1

      UniProtKB/TrEMBL
      I3JV65
      Conserved Domains (1) summary
      pfam15717
      Location:1483 → 2092
      PCM1_C; Pericentriolar material 1 C terminus

    9. XM_013274110.3 → XP_013129564.1  pericentriolar material 1 protein isoform X1

      UniProtKB/TrEMBL
      I3JV65
      Conserved Domains (1) summary
      pfam15717
      Location:1483 → 2092
      PCM1_C; Pericentriolar material 1 C terminus
    Nucleotide Protein
    Heading Accession and Version

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