tamalin trafficking regulator and scaffold protein tamalin [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tamalinprovided by ZNC
Official Full Name: trafficking regulator and scaffold protein tamalinprovided by ZNC
Primary source: ZFIN:ZDB-GENE-060312-30
See related: Ensembl:ENSDARG00000000588 AllianceGenome:ZFIN:ZDB-GENE-060312-30
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: grasp; graspl; zgc:136876
Summary: Acts upstream of or within regulation of neuron apoptotic process; regulation of oligodendrocyte apoptotic process; and spinal cord development. Is expressed in spinal cord. Orthologous to human TAMALIN (trafficking regulator and scaffold protein tamalin). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 23

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (32199588..32235999, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (32273057..32309468, complement)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Tamalin Function Is Required for the Survival of Neurons and Oligodendrocytes in the CNS.
Title: Tamalin Function Is Required for the Survival of Neurons and Oligodendrocytes in the CNS.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of neuron apoptotic process	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within regulation of neuron apoptotic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of oligodendrocyte apoptotic process	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within regulation of oligodendrocyte apoptotic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within spinal cord development	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within spinal cord development	IMP Inferred from Mutant Phenotype more info	PubMed

General protein information

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Preferred Names: general receptor for phosphoinositides 1-associated scaffold protein

Names: GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001039924.1 → NP_001035013.1 general receptor for phosphoinositides 1-associated scaffold protein

See identical proteins and their annotated locations for NP_001035013.1

Status: PROVISIONAL

Source sequence(s)

BC114298

UniProtKB/TrEMBL

A0A8M1N8C8, Q29RA7

Related

ENSDARP00000094120.2, ENSDART00000103343.3

Conserved Domains (1) summary

cd00992
Location:90 → 175

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...