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    LOC550070 Uncharacterized LOC550070 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 550070, updated on 9-Mar-2024

    Summary

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    Gene symbol
    LOC550070
    Gene description
    Uncharacterized LOC550070
    See related
    Ensembl:ENSXETG00000009005
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    See LOC550070 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (132180190..132204488, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (121804402..121828182, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene steroidogenic acute regulatory protein Neighboring gene uncharacterized LOC100492487 Neighboring gene LSM1 homolog, mRNA degradation associated Neighboring gene BAG cochaperone 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    G protein-coupled receptor kinase 5
    NP_001017316.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017316.2 → NP_001017316.1  G protein-coupled receptor kinase 5

      See identical proteins and their annotated locations for NP_001017316.1

      Status: PROVISIONAL

      Source sequence(s)
      CR855448
      UniProtKB/TrEMBL
      F7B5F5, Q28DL5
      Related
      ENSXETP00000019722.3, ENSXETT00000019722.4
      Conserved Domains (2) summary
      cl02565
      Location:35 → 179
      RGS; Regulator of G protein signaling (RGS) domain superfamily
      cl21453
      Location:183 → 495
      PKc_like; Protein Kinases, catalytic domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      132180190..132204488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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