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    LOC101696428 hemoglobin subunit beta [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101696428, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101696428
    Gene description
    hemoglobin subunit beta
    Locus tag
    GW7_03824
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC101696428 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624817.1 (6691101..6691222, complement)

    NW_004624817.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 51L1-like Neighboring gene olfactory receptor 52Z1-like Neighboring gene hemoglobin subunit gamma Neighboring gene hemoglobin subunit epsilon-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624817 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FRAMA: from RNA-seq data to annotated mRNA assemblies. Bens M, et al. BMC Genomics, 2016 Jan 14. PMID 26763976, Free PMC Article
    2. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables haptoglobin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hemoglobin alpha binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables organic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxygen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxygen carrier activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oxygen transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in blood microparticle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of haptoglobin-hemoglobin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of hemoglobin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hemoglobin subunit beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310284.1 → NP_001297213.1  hemoglobin subunit beta

      See identical proteins and their annotated locations for NP_001297213.1

      Status: PROVISIONAL

      Source sequence(s)
      KM486718
      UniProtKB/TrEMBL
      A0A0A7HRP5, G5BS33
      Conserved Domains (1) summary
      cd08925
      Location:7 → 146
      Hb-beta_like; Hemoglobin beta, gamma, delta, epsilon, and related Hb subunits

    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624817.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      6691101..6691222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases