ACDO1 Protein kinase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ACDO1
Official Full Name: Protein kinase superfamily protein
Primary source: TAIR:AT4G31390
Locus tag: AT4G31390
See related: Araport:AT4G31390
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ABC1-like kinase 1; ABC1-like kinase related to chlorophyll degradation and oxidative stress 1; ABC1K1; AtACDO1; F3L17.6; PGR6; PROTON GRADIENT REGULATION 6
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Genomic context

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See ACDO1 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 14

Sequence:: Chromosome: 4; NC_003075.7 (15233042..15237193)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

In a pgr6 mutant, the photoactive pool is depleted and becomes limiting under high light, affecting short-term acclimation and photosynthetic efficiency. In the long term, pgr6 seedlings fail to adapt to high light and develop a conditional variegated leaf phenotype. Therefore, PGR6 activity, by regulating plastoquinone homoeostasis, is required to cope with high light.
Title: Plastoquinone homoeostasis by Arabidopsis proton gradient regulation 6 is essential for photosynthetic efficiency.
novel negative component in red light-mediated development
Title: Arabidopsis atypical kinase ABC1K1 is involved in red light-mediated development.
ABC1Ks (activity of bc1 complex kinases) are atypical protein kinases. The ABC1K gene family is evolutionarily conserved and has greatly expanded in photosynthetic organisms. ABC1K1 and ABC1K3 act oppositely to cope with photodamage under red light. [ABC1K1]
Title: Arabidopsis Atypical Kinases ABC1K1 and ABC1K3 Act Oppositely to Cope with Photodamage Under Red Light.
ACDO1, an ABC1-like kinase gene, is involved in chlorophyll degradation and the response to photooxidative stress. [ACDO1]
Title: AtACDO1, an ABC1-like kinase gene, is involved in chlorophyll degradation and the response to photooxidative stress in Arabidopsis.
Data indicate that the ABC1K1/ABC1K3 complex contributes to plastoglobules (PGs) function in prenyl-lipid metabolism, stress response, and thylakoid remodeling.
Title: Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway.

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General gene information

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NM_001036686.1

Supported by ESTs:

NM_001342076.1

Supported by ESTs:

NM_119288.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein kinase activity	IDA Inferred from Direct Assay more info	PubMed
enables protein kinase activity	IEA Inferred from Electronic Annotation more info
enables protein serine/threonine kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cellular response to nitrogen starvation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within chlorophyll catabolic process	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in photosynthetic electron transport chain	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in plastoglobule organization	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of carotenoid biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of chlorophyll biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of anthocyanin biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of photosynthesis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of tocopherol cyclase activity	IDA Inferred from Direct Assay more info	PubMed
involved_in response to blue light	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in response to paraquat	IEP Inferred from Expression Pattern more info	PubMed
acts_upstream_of_or_within response to photooxidative stress	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in response to photooxidative stress	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in response to red light	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in response to water deprivation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in thylakoid membrane organization	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	IDA Inferred from Direct Assay more info	PubMed
located_in plasma membrane	HDA more info	PubMed
located_in plastoglobule	HDA more info	PubMed

General protein information

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Preferred Names: Protein kinase superfamily protein

NP_001031763.1

Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G79600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_194867.2

Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G79600.1); Has 10230 Blast hits to 10198 proteins in 1822 species: Archae - 124; Bacteria - 4469; Metazoa - 404; Fungi - 492; Plants - 709; Viruses - 16; Other Eukaryotes - 4016 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

15233042..15237193

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_119288.3 → NP_194867.2 Protein kinase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_194867.2

Status: REVIEWED

UniProtKB/Swiss-Prot

O49588, Q8RWG1

UniProtKB/TrEMBL

A0A178V5V0, A0A5S9XXM0

Conserved Domains (1) summary

COG0661
Location:166 → 593

AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
NM_001342076.1 → NP_001329437.1 Protein kinase superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B7P6

Conserved Domains (1) summary

COG0661
Location:2 → 394

AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]
NM_001036686.1 → NP_001031763.1 Protein kinase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001031763.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9XXM0

Conserved Domains (2) summary

COG0661
Location:166 → 568

AarF; Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family [Coenzyme transport and metabolism, Signal transduction mechanisms]

cd05121
Location:206 → 427

ABC1_ADCK3-like; Activator of bc1 complex (ABC1) kinases (also called aarF domain containing kinase 3) and similar proteins