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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_042235.1 RefSeqGene
- Range
-
11257..48361
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001136037.4 → NP_001129509.2 LIM and senescent cell antigen-like-containing domain protein 2 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This transcript represents variant 1 and encodes isoform 1.
- Source sequence(s)
-
AC010976, AC074114, AK022470, AK055363, BC065816, DC356496, DR006887
- Consensus CDS
-
CCDS54396.1
- UniProtKB/TrEMBL
-
B3KNZ3
- Related
- ENSP00000443794.2, ENST00000545738.6
- Conserved Domains (5) summary
-
- cd09331
Location:37 → 95
- LIM1_PINCH; The first LIM domain of protein PINCH
- cd09332
Location:98 → 149
- LIM2_PINCH; The second LIM domain of protein PINCH
- cd09333
Location:162 → 212
- LIM3_PINCH; The third LIM domain of protein PINCH
- cd09334
Location:218 → 271
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:279 → 332
- LIM5_PINCH; The fifth LIM domain of protein PINCH
-
NM_001161403.3 → NP_001154875.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform 3
See identical proteins and their annotated locations for NP_001154875.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an in-frame exon in the 5' coding region compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
- Source sequence(s)
-
AC010976, AC074114, BC065816, DR006887
- Consensus CDS
-
CCDS54395.1
- UniProtKB/Swiss-Prot
- A6NLH0, B4DMV1, F5H6E6, Q7Z4I2, Q7Z4I6, Q7Z4I7, Q7Z4I8, Q8NFE7, Q9HA13
- UniProtKB/TrEMBL
-
B3KNZ3
- Related
- ENSP00000347240.4, ENST00000355119.9
- Conserved Domains (5) summary
-
- cd09331
Location:15 → 73
- LIM1_PINCH; The first LIM domain of protein PINCH
- cd09332
Location:76 → 127
- LIM2_PINCH; The second LIM domain of protein PINCH
- cd09333
Location:140 → 190
- LIM3_PINCH; The third LIM domain of protein PINCH
- cd09334
Location:196 → 249
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:257 → 310
- LIM5_PINCH; The fifth LIM domain of protein PINCH
-
NM_001161404.2 → NP_001154876.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform 5
See identical proteins and their annotated locations for NP_001154876.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (5) is shorter than isoform 1.
- Source sequence(s)
-
AC010976, AF527766, DA890151
- Consensus CDS
-
CCDS54394.1
- UniProtKB/TrEMBL
-
B3KNZ3
- Related
- ENSP00000387002.1, ENST00000410011.5
- Conserved Domains (5) summary
-
- cd09331
Location:10 → 68
- LIM1_PINCH; The first LIM domain of protein PINCH
- cd09332
Location:71 → 122
- LIM2_PINCH; The second LIM domain of protein PINCH
- cd09333
Location:135 → 185
- LIM3_PINCH; The third LIM domain of protein PINCH
- cd09334
Location:191 → 244
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:252 → 305
- LIM5_PINCH; The fifth LIM domain of protein PINCH
-
NM_001256542.2 → NP_001243471.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform 4
See identical proteins and their annotated locations for NP_001243471.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (4) is shorter at the N-terminus, compared to isoform 1.
- Source sequence(s)
-
AF527770, BX458594, DA848179
- Consensus CDS
-
CCDS58725.1
- UniProtKB/TrEMBL
-
Q7Z4I3
- Related
- ENSP00000386570.1, ENST00000410038.5
- Conserved Domains (3) summary
-
- cd09334
Location:44 → 97
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:105 → 158
- LIM5_PINCH; The fifth LIM domain of protein PINCH
- cl02475
Location:2 → 38
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_017980.5 → NP_060450.2 LIM and senescent cell antigen-like-containing domain protein 2 isoform 2
See identical proteins and their annotated locations for NP_060450.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is longer than isoform 1.
- Source sequence(s)
-
AC074114, AF527764, AF527765, BP221000
- Consensus CDS
-
CCDS2147.1
- UniProtKB/TrEMBL
-
B3KNZ3
- Related
- ENSP00000326888.5, ENST00000324938.9
- Conserved Domains (5) summary
-
- cd09331
Location:39 → 97
- LIM1_PINCH; The first LIM domain of protein PINCH
- cd09332
Location:100 → 151
- LIM2_PINCH; The second LIM domain of protein PINCH
- cd09333
Location:164 → 214
- LIM3_PINCH; The third LIM domain of protein PINCH
- cd09334
Location:220 → 273
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:281 → 334
- LIM5_PINCH; The fifth LIM domain of protein PINCH
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
127638426..127681786 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006712627.5 → XP_006712690.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X9
- UniProtKB/TrEMBL
-
Q7Z4I3
- Conserved Domains (3) summary
-
- cd09333
Location:24 → 74
- LIM3_PINCH; The third LIM domain of protein PINCH
- cd09334
Location:80 → 133
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:141 → 194
- LIM5_PINCH; The fifth LIM domain of protein PINCH
-
XM_005263710.3 → XP_005263767.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X6
- UniProtKB/TrEMBL
-
Q7Z4I5
- Conserved Domains (4) summary
-
- cd09332
Location:7 → 58
- LIM2_PINCH; The second LIM domain of protein PINCH
- cd09333
Location:71 → 121
- LIM3_PINCH; The third LIM domain of protein PINCH
- cd09334
Location:127 → 180
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:188 → 241
- LIM5_PINCH; The fifth LIM domain of protein PINCH
-
XM_047444970.1 → XP_047300926.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X4
-
XM_024452983.2 → XP_024308751.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X2
- UniProtKB/TrEMBL
-
B3KNZ3
- Related
- ENSP00000386637.2, ENST00000409808.6
- Conserved Domains (5) summary
-
- cd09331
Location:10 → 68
- LIM1_PINCH; The first LIM domain of protein PINCH
- cd09332
Location:71 → 122
- LIM2_PINCH; The second LIM domain of protein PINCH
- cd09333
Location:135 → 185
- LIM3_PINCH; The third LIM domain of protein PINCH
- cd09334
Location:191 → 244
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:252 → 305
- LIM5_PINCH; The fifth LIM domain of protein PINCH
-
XM_011511453.2 → XP_011509755.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X3
- Conserved Domains (4) summary
-
- cd09331
Location:39 → 97
- LIM1_PINCH; The first LIM domain of protein PINCH
- cd09332
Location:100 → 151
- LIM2_PINCH; The second LIM domain of protein PINCH
- cd09335
Location:240 → 293
- LIM5_PINCH; The fifth LIM domain of protein PINCH
- cl02475
Location:164 → 205
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
XM_047444963.1 → XP_047300919.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X1
- UniProtKB/TrEMBL
-
B3KNZ3
-
XM_024452986.2 → XP_024308754.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X11
- UniProtKB/TrEMBL
-
Q7Z4I3
- Related
- ENSP00000386252.1, ENST00000409286.5
- Conserved Domains (3) summary
-
- cd09334
Location:44 → 97
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:105 → 158
- LIM5_PINCH; The fifth LIM domain of protein PINCH
- cl02475
Location:2 → 38
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
XM_047444976.1 → XP_047300932.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X11
- UniProtKB/TrEMBL
-
Q7Z4I3
-
XM_047444975.1 → XP_047300931.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X11
- UniProtKB/TrEMBL
-
Q7Z4I3
-
XM_024452985.2 → XP_024308753.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X11
- UniProtKB/TrEMBL
-
Q7Z4I3
- Conserved Domains (3) summary
-
- cd09334
Location:44 → 97
- LIM4_PINCH; The fourth LIM domain of protein PINCH
- cd09335
Location:105 → 158
- LIM5_PINCH; The fifth LIM domain of protein PINCH
- cl02475
Location:2 → 38
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
XM_047444972.1 → XP_047300928.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X7
- UniProtKB/TrEMBL
-
Q7Z4I4
-
XM_017004469.2 → XP_016859958.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X8
-
XM_047444971.1 → XP_047300927.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X5
-
XM_006712628.4 → XP_006712691.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X10
- Conserved Domains (2) summary
-
- cd09331
Location:39 → 97
- LIM1_PINCH; The first LIM domain of protein PINCH
- cd09332
Location:100 → 143
- LIM2_PINCH; The second LIM domain of protein PINCH
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
128073680..128117027 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054342902.1 → XP_054198877.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X9
- UniProtKB/TrEMBL
-
Q7Z4I3
-
XM_054342899.1 → XP_054198874.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X6
- UniProtKB/TrEMBL
-
Q7Z4I5
-
XM_054342897.1 → XP_054198872.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X4
-
XM_054342895.1 → XP_054198870.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X2
- UniProtKB/TrEMBL
-
B3KNZ3
-
XM_054342896.1 → XP_054198871.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X3
-
XM_054342894.1 → XP_054198869.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X1
- UniProtKB/TrEMBL
-
B3KNZ3
-
XM_054342905.1 → XP_054198880.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X11
- UniProtKB/TrEMBL
-
Q7Z4I3
-
XM_054342904.1 → XP_054198879.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X11
- UniProtKB/TrEMBL
-
Q7Z4I3
-
XM_054342900.1 → XP_054198875.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X7
- UniProtKB/TrEMBL
-
Q7Z4I4
-
XM_054342901.1 → XP_054198876.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X8
-
XM_054342898.1 → XP_054198873.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X5
-
XM_054342903.1 → XP_054198878.1 LIM and senescent cell antigen-like-containing domain protein 2 isoform X10