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    bZIP16 basic region/leucine zipper transcription factor 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818118, updated on 18-Sep-2024

    Summary

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    Official Symbol
    bZIP16
    Official Full Name
    basic region/leucine zipper transcription factor 16
    Primary source
    TAIR:AT2G35530
    Locus tag
    AT2G35530
    See related
    Araport:AT2G35530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtbZIP16; basic region/leucine zipper transcription factor 16; T32F12.9; T32F12_9
    Summary
    Encodes a G group bZIP transcription factor family member that can bind cis elements with an ACGT core, such as G-box, Hex, C-box and As-1. The protein is localized in the nucleus and can homodimerize and can heterodimerize with other G group members.
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    Genomic context

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    See bZIP16 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (14922836..14926609, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene shikimate kinase like 2 Neighboring gene uncharacterized protein Neighboring gene Defender against death (DAD family) protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene basic pentacysteine 7 Neighboring gene serpin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis bZIP16 transcription factor integrates light and hormone signaling pathways to regulate early seedling development. Hsieh WP, et al. Plant Cell, 2012 Oct. PMID 23104829, Free PMC Article
    2. An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis. Norén Lindbäck L, et al. New Phytol, 2023 Nov. PMID 37602940, Free PMC Article
    3. Redox-mediated mechanisms regulate DNA binding activity of the G-group of basic region leucine zipper (bZIP) transcription factors in Arabidopsis. Shaikhali J, et al. J Biol Chem, 2012 Aug 10. PMID 22718771, Free PMC Article
    4. GIP1 protein is a novel cofactor that regulates DNA-binding affinity of redox-regulated members of bZIP transcription factors involved in the early stages of Arabidopsis development. Shaikhali J. Protoplasma, 2015 May. PMID 25387999
    5. AtbZIP16 and AtbZIP68, two new members of GBFs, can interact with other G group bZIPs in Arabidopsis thaliana. Shen H, et al. BMB Rep, 2008 Feb 29. PMID 18315949

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis.
      Title: An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis.
    2. bZIP16 functions to promote seed germination and hypocotyl elongation during the early stages of Arabidopsis seedling development.
      Title: Arabidopsis bZIP16 transcription factor integrates light and hormone signaling pathways to regulate early seedling development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_179917.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    basic region/leucine zipper transcription factor 16
    NP_850248.2
    • basic region/leucine zipper transcription factor 16 (bZIP16); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 68 (TAIR:AT1G32150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14922836..14926609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179917.4 → NP_850248.2  basic region/leucine zipper transcription factor 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850248.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82288, Q501B2
      UniProtKB/TrEMBL
      A0A178VPW6, A0A5S9X461, A0A654F9R2
      Conserved Domains (3) summary
      smart00338
      Location:304 → 367
      BRLZ; basic region leucin zipper
      pfam07777
      Location:1 → 103
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:142 → 272
      MFMR_assoc; Disordered region downstream of MFMR
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q501B2.1

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