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    Myb/SANT-like DNA-binding domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830465, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Myb/SANT-like DNA-binding domain protein
    Primary source
    TAIR:AT5G05800
    Locus tag
    AT5G05800
    See related
    Araport:AT5G05800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJJ3.22; MJJ3_22
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (1742994..1745245, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene tRNA-Arg Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism. Zorzatto C, et al. Nature, 2015 Apr 30. PMID 25707794, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085067.2
    NM_001342836.1
    NM_001342837.1
    NM_001342838.1
    NM_120662.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Myb/SANT-like DNA-binding domain protein
    NP_001078536.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    NP_196199.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1742994..1745245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120662.3 → NP_196199.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196199.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFJ8
      UniProtKB/TrEMBL
      A0A178UE54, A0A5S9Y2G0
      Conserved Domains (1) summary
      pfam12776
      Location:7 → 100
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    2. NM_001085067.2 → NP_001078536.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078536.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFJ8
      UniProtKB/TrEMBL
      A0A178UE54, A0A5S9Y2G0
      Conserved Domains (1) summary
      pfam12776
      Location:7 → 100
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    3. NM_001342836.1 → NP_001332327.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFJ8
      UniProtKB/TrEMBL
      A0A178UE54, A0A5S9Y2G0
      Conserved Domains (1) summary
      pfam12776
      Location:7 → 100
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    4. NM_001342837.1 → NP_001332326.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFJ8
      UniProtKB/TrEMBL
      A0A178UE54, A0A5S9Y2G0
      Conserved Domains (1) summary
      pfam12776
      Location:7 → 100
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

    5. NM_001342838.1 → NP_001332325.1  Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFJ8
      UniProtKB/TrEMBL
      A0A178UE54, A0A5S9Y2G0
      Conserved Domains (1) summary
      pfam12776
      Location:7 → 100
      Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFJ8.1

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