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    SBP2 selenium-binding protein 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827040, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SBP2
    Official Full Name
    selenium-binding protein 2
    Primary source
    TAIR:AT4G14040
    Locus tag
    AT4G14040
    See related
    Araport:AT4G14040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3061C; EDA38; EMBRYO SAC DEVELOPMENT ARREST 38; FCAALL.29; selenium-binding protein 2
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    Genomic context

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    See SBP2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (8100349..8103094, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Rapid alkalinization factor (RALF) family protein Neighboring gene selenium-binding protein 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Promoter analysis and functional implications of the selenium binding protein (SBP) gene family in Arabidopsis thaliana. Valassakis C, et al. J Plant Physiol, 2018 May-Jun. PMID 29574326
    2. A pair of G-type lectin receptor-like kinases modulates nlp20-mediated immune responses by coupling to the RLP23 receptor complex. Bao Y, et al. J Integr Plant Biol, 2023 May. PMID 36633200
    3. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    4. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    5. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117479.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables selenium binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within polar nucleus fusion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    selenium-binding protein 2
    NP_193140.1
    • selenium-binding protein 2 (SBP2); FUNCTIONS IN: selenium binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 1 (TAIR:AT4G14030.2); Has 907 Blast hits to 897 proteins in 207 species: Archae - 39; Bacteria - 194; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8100349..8103094 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117479.4 → NP_193140.1  selenium-binding protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193140.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23265, Q8L7F3, Q93WN0, Q9ASS5
      UniProtKB/TrEMBL
      A0A5S9XSD2, A0A654FP28
      Conserved Domains (1) summary
      pfam05694
      Location:20 → 487
      SBP56; 56kDa selenium binding protein (SBP56)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93WN0.1

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