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    exd extradenticle [ Harpegnathos saltator (Jerdon's jumping ant) ]

    Gene ID: 105190126, updated on 10-Oct-2024

    Summary

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    Gene symbol
    exd
    Gene description
    extradenticle
    Locus tag
    EAI_10445
    See related
    EnsemblRapid:LOC105190126
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Harpegnathos saltator
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Harpegnathos
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See exd in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Hsal_v8.5 (GCF_003227715.1) Unplaced Scaffold NW_020229895.1 (161567..211538)
    101 previous assembly HarSal_1.0 (GCF_000147195.1) Unplaced Scaffold NW_011653924.1 (229468..278499)

    NW_020229895.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase PP1-beta catalytic subunit Neighboring gene MORF-related gene 15 Neighboring gene Secretory 16 Neighboring gene transmembrane protein 47

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in animal organ morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein extradenticle

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Harpegnathos saltator Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Hsal_v8.5

    Genomic

    1. NW_020229895.1 Reference Hsal_v8.5

      Range
      161567..211538
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011152662.3 → XP_011150964.1  homeobox protein extradenticle isoform X1

      Related
      XP_011150964.1, XM_011152662.3
      Conserved Domains (2) summary
      cd00086
      Location:251 → 311
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03792
      Location:54 → 249
      PBC; PBC domain

    2. XM_011152664.3 → XP_011150966.1  homeobox protein extradenticle isoform X3

      Related
      XP_011150966.1, XM_011152664.3
      Conserved Domains (2) summary
      cd00086
      Location:251 → 311
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03792
      Location:54 → 249
      PBC; PBC domain

    3. XM_011152663.3 → XP_011150965.1  homeobox protein extradenticle isoform X2

      Related
      XP_011150965.1, XM_011152663.3
      Conserved Domains (2) summary
      cd00086
      Location:251 → 311
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03792
      Location:54 → 249
      PBC; PBC domain

    4. XM_025304916.1 → XP_025160701.1  homeobox protein extradenticle isoform X4

      Related
      XP_025160701.1, XM_025304916.1
      Conserved Domains (2) summary
      cd00086
      Location:251 → 311
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03792
      Location:54 → 249
      PBC; PBC domain

    5. XM_011152665.3 → XP_011150967.1  homeobox protein extradenticle isoform X5

      Related
      XP_011150967.1, XM_011152665.3
      Conserved Domains (2) summary
      cd00086
      Location:251 → 311
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03792
      Location:54 → 249
      PBC; PBC domain

    6. XM_011152666.3 → XP_011150968.1  homeobox protein extradenticle isoform X6

      Related
      XP_011150968.1, XM_011152666.3
      Conserved Domains (2) summary
      cd00086
      Location:251 → 311
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03792
      Location:54 → 249
      PBC; PBC domain
    Nucleotide Protein Strain
    Heading Accession and Version

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