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    yl Putative vitellogenin receptor yl [ Solenopsis invicta (red fire ant) ]

    Gene ID: 105200757, updated on 10-Oct-2024

    Summary

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    Gene symbol
    yl
    Gene description
    Putative vitellogenin receptor yl
    Locus tag
    SINV_03683
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solenopsis invicta
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
    Also known as
    VgR; SiVgR
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    104 current UNIL_Sinv_3.0 (GCF_016802725.1) 2 NC_052665.1 (8088469..8102708)
    103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521529.1 (5346816..5361327)

    Chromosome 2 - NC_052665.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase me31b Neighboring gene protein snail Neighboring gene glutathione synthetase Neighboring gene uncharacterized LOC120356917 Neighboring gene Ionotropic receptor 76b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. cDNA cloning and transcriptional regulation of the vitellogenin receptor from the imported fire ant, Solenopsis invicta Buren (Hymenoptera: Formicidae). Chen ME, et al. Insect Mol Biol, 2004 Apr. PMID 15056367
    2. The genome of the fire ant Solenopsis invicta. Wurm Y, et al. Proc Natl Acad Sci U S A, 2011 Apr 5. PMID 21282665, Free PMC Article
    3. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vitellogenin receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304596.1 → NP_001291525.1  vitellogenin receptor precursor

      See identical proteins and their annotated locations for NP_001291525.1

      Status: PROVISIONAL

      Source sequence(s)
      AY262832
      UniProtKB/Swiss-Prot
      Q6X0I2
      Conserved Domains (5) summary
      smart00192
      Location:1052 → 1084
      LDLa; Low-density lipoprotein receptor domain class A
      smart00135
      Location:441 → 483
      LY; Low-density lipoprotein-receptor YWTD domain
      cd00112
      Location:1179 → 1213
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
      pfam00058
      Location:417 → 457
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:890 → 926
      FXa_inhibition; Coagulation Factor Xa inhibitory site

    RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UNIL_Sinv_3.0

    Genomic

    1. NC_052665.1 Reference UNIL_Sinv_3.0

      Range
      8088469..8102708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6X0I2.1 GenPept UniProtKB/Swiss-Prot:Q6X0I2

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