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    ECU11_1270 RuvB family ATP-dependent DNA helicase reptin [ Encephalitozoon cuniculi GB-M1 ]

    Gene ID: 860087, updated on 17-May-2024

    Summary

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    Gene symbol
    ECU11_1270
    Gene description
    RuvB family ATP-dependent DNA helicase reptin
    Locus tag
    ECU11_1270
    See related
    MicrosporidiaDB:ECU11_1270; VEuPathDB:ECU11_1270
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Encephalitozoon cuniculi GB-M1 (isolate: GB-M1)
    Lineage
    Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon
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    Genomic context

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    See ECU11_1270 in Genome Data Viewer
    Location:
    chromosome: XI
    Exon count:
    1
    Sequence:
    Chromosome: XI; NC_003237.2 (160663..161919, complement)

    Chromosome XI - NC_003237.2Genomic Context describing neighboring genes Neighboring gene tRNA-Gly Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003237.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation. Peyretaillade E, et al. BMC Genomics, 2009 Dec 15. PMID 20003517, Free PMC Article
    2. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Katinka MD, et al. Nature, 2001 Nov 22. PMID 11719806
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in box C/D snoRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of NuA4 histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of R2TP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of Swr1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RuvB family ATP-dependent DNA helicase reptin
    NP_586433.1
    • 11_1270, similarity to HYPOTHETICAL PROTEIN YP59_MYCTU, gene found by Glimmer

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003237.2 Reference assembly

      Range
      160663..161919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001042266.1 → NP_586433.1  RuvB family ATP-dependent DNA helicase reptin [Encephalitozoon cuniculi GB-M1]

      See identical proteins and their annotated locations for NP_586433.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q8SU27
      UniProtKB/TrEMBL
      M1JHN9
      Conserved Domains (2) summary
      COG1224
      Location:5 → 418
      TIP49; DNA helicase TIP49, TBP-interacting protein [Transcription]
      cl21455
      Location:57 → 83
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8SU27.1

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