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    LOC105108702 oxysterol-binding protein-related protein 1C-like [ Populus euphratica (Euphrates poplar) ]

    Gene ID: 105108702, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC105108702
    Gene description
    oxysterol-binding protein-related protein 1C-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus euphratica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC105108702 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011500078.1 (108870..118640, complement)

    NW_011500078.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105108699 Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 1-like Neighboring gene biotin--protein ligase 2-like Neighboring gene histone-lysine N-methyltransferase ASHR1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011500078.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxysterol-binding protein-related protein 1C-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PopEup_1.0 Primary Assembly

    Genomic

    1. NW_011500078.1 Reference PopEup_1.0 Primary Assembly

      Range
      108870..118640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011003111.1 → XP_011001413.1  oxysterol-binding protein-related protein 1C-like isoform X1

      UniProtKB/TrEMBL
      A0AAJ6SYP7
      Conserved Domains (3) summary
      cd13294
      Location:104 → 235
      PH_ORP_plant; Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain
      pfam00169
      Location:104 → 227
      PH; PH domain
      pfam01237
      Location:437 → 789
      Oxysterol_BP; Oxysterol-binding protein

    2. XM_011003112.1 → XP_011001414.1  oxysterol-binding protein-related protein 1C-like isoform X2

      UniProtKB/TrEMBL
      A0AAJ6X115
      Conserved Domains (3) summary
      cd13294
      Location:104 → 235
      PH_ORP_plant; Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain
      pfam00169
      Location:104 → 227
      PH; PH domain
      pfam01237
      Location:437 → 758
      Oxysterol_BP; Oxysterol-binding protein
    Nucleotide Protein
    Heading Accession and Version

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