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    TNFSF4 TNF superfamily member 4 [ Bison bison bison ]

    Gene ID: 104995823, updated on 12-Mar-2024

    Summary

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    Gene symbol
    TNFSF4
    Gene description
    TNF superfamily member 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bison bison bison (sub-species: bison)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
    Orthologs
    human mouse all
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    Genomic context

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    See TNFSF4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011494861.1 (904968..938119, complement)

    NW_011494861.1Genomic Context describing neighboring genes Neighboring gene UDP-N-acetylhexosamine pyrophosphorylase pseudogene Neighboring gene hsc70-interacting protein pseudogene Neighboring gene arylacetamide deacetylase like 4 Neighboring gene dehydrogenase/reductase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011494861.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor necrosis factor ligand superfamily member 4
    Names
    tumor necrosis factor superfamily member 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bison_UMD1.0 Primary Assembly

    Genomic

    1. NW_011494861.1 Reference Bison_UMD1.0 Primary Assembly

      Range
      904968..938119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010849840.1 → XP_010848142.1  tumor necrosis factor ligand superfamily member 4 isoform X1

      UniProtKB/TrEMBL
      A0A6P3I8R7
      Conserved Domains (1) summary
      cl00147
      Location:85 → 184
      TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

    2. XM_010849841.1 → XP_010848143.1  tumor necrosis factor ligand superfamily member 4 isoform X2

      See identical proteins and their annotated locations for XP_010848143.1

      UniProtKB/TrEMBL
      A0A6P3I0D9
      Conserved Domains (1) summary
      smart00207
      Location:40 → 139
      TNF; Tumour necrosis factor family

    RNA

    1. XR_826096.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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