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    Gal3st2c galactose-3-O-sulfotransferase 2C [ Mus musculus (house mouse) ]

    Gene ID: 619597, updated on 9-Dec-2024

    Summary

    Official Symbol
    Gal3st2cprovided by MGI
    Official Full Name
    galactose-3-O-sulfotransferase 2Cprovided by MGI
    Primary source
    MGI:MGI:3646771
    See related
    Ensembl:ENSMUSG00000073608 AllianceGenome:MGI:3646771
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm219; Gm6086; EG619597
    Summary
    Predicted to enable galactose 3-O-sulfotransferase activity. Predicted to be involved in glycoprotein biosynthetic process. Orthologous to human GAL3ST2 (galactose-3-O-sulfotransferase 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in small intestine adult (RPKM 16.6), duodenum adult (RPKM 16.4) and 2 other tissues See more
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    Genomic context

    See Gal3st2c in Genome Data Viewer
    Location:
    1 D; 1 47.45 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (93918227..93939261)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (93990505..94011539)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene galactose-3-O-sulfotransferase 2B Neighboring gene D-2-hydroxyglutarate dehydrogenase pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr1:95931456-95931756 Neighboring gene sialidase 4 Neighboring gene programmed cell death 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables galactose 3-O-sulfotransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables sulfotransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in glycoprotein biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    galactose-3-O-sulfotransferase 2C

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039219.3NP_001034308.1  galactose-3-O-sulfotransferase 2C

      See identical proteins and their annotated locations for NP_001034308.1

      Status: VALIDATED

      Source sequence(s)
      AC167963, AK145447, CJ080564
      Consensus CDS
      CCDS48330.1
      UniProtKB/TrEMBL
      Q3ULK5, Q3UN22
      Related
      ENSMUSP00000095234.4, ENSMUST00000097632.5
      Conserved Domains (1) summary
      cl22970
      Location:33382
      Sulfotransfer_2; Sulfotransferase family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      93918227..93939261
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006529771.3XP_006529834.1  galactose-3-O-sulfotransferase 2C isoform X1

      See identical proteins and their annotated locations for XP_006529834.1

      UniProtKB/TrEMBL
      Q3ULK5, Q3UN22
      Conserved Domains (1) summary
      cl22970
      Location:33382
      Sulfotransfer_2; Sulfotransferase family