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    LOC104955701 cullin-5-like [ Notothenia coriiceps (black rockcod) ]

    Gene ID: 104955701, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC104955701
    Gene description
    cullin-5-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Notothenia coriiceps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
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    Genomic context

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    See LOC104955701 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011357369.1 (4314197..4317950)

    NW_011357369.1Genomic Context describing neighboring genes Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like Neighboring gene beta-crystallin B3-like Neighboring gene forkhead box I2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011357369.1 Unplaced Scaffold Reference NC01 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul5-RING ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cullin-5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NC01 Primary Assembly

    Genomic

    1. NW_011357369.1 Reference NC01 Primary Assembly

      Range
      4314197..4317950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010783089.1 → XP_010781391.1  cullin-5-like

      UniProtKB/TrEMBL
      A0A6I9P4K1
      Conserved Domains (2) summary
      smart00182
      Location:78 → 218
      CULLIN; Cullin
      pfam00888
      Location:36 → 223
      Cullin; Cullin family
    Nucleotide Protein
    Heading Accession and Version

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