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    LOC100243854 protein LOL1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100243854, updated on 29-Sep-2023

    Summary

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    Gene symbol
    LOC100243854
    Gene description
    protein LOL1
    Locus tag
    VIT_00013190001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100243854 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 2 NC_081806.1 (8389066..8392713, complement)
    102 previous assembly 12X (GCF_000003745.3) 2 NC_012008.3 (6931509..6935172, complement)

    Chromosome 2 - NC_081806.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At3g56230-like Neighboring gene ferredoxin C 2, chloroplastic Neighboring gene eyes absent homolog Neighboring gene plant intracellular Ras-group-related LRR protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein LOL1; protein LSD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081806.1 Reference ASM3070453v1 Primary Assembly

      Range
      8389066..8392713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002281063.5 → XP_002281099.1  protein LOL1 isoform X1

      See identical proteins and their annotated locations for XP_002281099.1

      UniProtKB/TrEMBL
      A5B2W9
      Conserved Domains (1) summary
      pfam06943
      Location:67 → 91
      zf-LSD1; LSD1 zinc finger

    2. XM_010665474.3 → XP_010663776.1  protein LOL1 isoform X1

      See identical proteins and their annotated locations for XP_010663776.1

      UniProtKB/TrEMBL
      A5B2W9
      Conserved Domains (1) summary
      pfam06943
      Location:67 → 91
      zf-LSD1; LSD1 zinc finger

    3. XM_010665471.3 → XP_010663773.1  protein LOL1 isoform X1

      See identical proteins and their annotated locations for XP_010663773.1

      UniProtKB/TrEMBL
      A5B2W9
      Conserved Domains (1) summary
      pfam06943
      Location:67 → 91
      zf-LSD1; LSD1 zinc finger

    4. XM_010665465.3 → XP_010663767.1  protein LOL1 isoform X1

      See identical proteins and their annotated locations for XP_010663767.1

      UniProtKB/TrEMBL
      A5B2W9
      Conserved Domains (1) summary
      pfam06943
      Location:67 → 91
      zf-LSD1; LSD1 zinc finger

    5. XM_019224426.2 → XP_019079971.1  protein LSD1 isoform X2

      UniProtKB/TrEMBL
      A5B2W9
    Nucleotide Protein
    Heading Accession and Version

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