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    LOC104759236 pentatricopeptide repeat-containing protein At1g15510, chloroplastic [ Camelina sativa (false flax) ]

    Gene ID: 104759236, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC104759236
    Gene description
    pentatricopeptide repeat-containing protein At1g15510, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camelina sativa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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    Genomic context

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    See LOC104759236 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current Cs (GCF_000633955.1) 17 NC_025701.1 (7150862..7154073)

    Chromosome 17 - NC_025701.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104755866 Neighboring gene ADP,ATP carrier protein 2, chloroplastic-like Neighboring gene ABC transporter G family member 40-like Neighboring gene L-type lectin-domain containing receptor kinase S.1-like Neighboring gene uncharacterized LOC104759238

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_025701.1 Chromosome 17 Reference Cs

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g15510, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cs

    Genomic

    1. NC_025701.1 Reference Cs

      Range
      7150862..7154073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010482186.2 → XP_010480488.1  pentatricopeptide repeat-containing protein At1g15510, chloroplastic

      Conserved Domains (5) summary
      PLN03077
      Location:5 → 867
      PLN03077; Protein ECB2; Provisional
      TIGR00756
      Location:163 → 198
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:567 → 594
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:265 → 295
      PPR; PPR repeat
      pfam14432
      Location:737 → 860
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version

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