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    LOC104787787 probable LRR receptor-like serine/threonine-protein kinase At1g67720 [ Camelina sativa (false flax) ]

    Gene ID: 104787787, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC104787787
    Gene description
    probable LRR receptor-like serine/threonine-protein kinase At1g67720
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camelina sativa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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    Genomic context

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    See LOC104787787 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current Cs (GCF_000633955.1) 5 NC_025689.1 (28952959..28957762)

    Chromosome 5 - NC_025689.1Genomic Context describing neighboring genes Neighboring gene protein HHL1, chloroplastic Neighboring gene two-component response regulator ARR11 Neighboring gene very-long-chain 3-oxoacyl-CoA reductase 1-like Neighboring gene very-long-chain 3-oxoacyl-CoA reductase 1 Neighboring gene photosystem II core complex proteins psbY, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_025689.1 Chromosome 5 Reference Cs

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. Liang C, et al. BMC Genomics, 2013 Mar 5. PMID 23496985, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable LRR receptor-like serine/threonine-protein kinase At1g67720

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cs

    Genomic

    1. NC_025689.1 Reference Cs

      Range
      28952959..28957762
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010513422.2 → XP_010511724.1  probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1

      Conserved Domains (4) summary
      smart00221
      Location:608 → 873
      STYKc; Protein kinase; unclassified specificity
      cd14066
      Location:612 → 873
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:416 → 439
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12819
      Location:29 → 360
      Malectin_like; Carbohydrate-binding protein of the ER

    2. XM_010513423.2 → XP_010511725.1  probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2

      Conserved Domains (4) summary
      smart00221
      Location:604 → 869
      STYKc; Protein kinase; unclassified specificity
      cd14066
      Location:608 → 869
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:416 → 439
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12819
      Location:29 → 360
      Malectin_like; Carbohydrate-binding protein of the ER
    Nucleotide Protein
    Heading Accession and Version

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