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    RUXF small nuclear ribonucleoprotein F [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829145, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RUXF
    Official Full Name
    small nuclear ribonucleoprotein F
    Primary source
    TAIR:AT4G30220
    Locus tag
    AT4G30220
    See related
    Araport:AT4G30220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9N11.70; F9N11_70; small nuclear ribonucleoprotein F
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    Genomic context

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    See RUXF in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (14802931..14804461, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene vernalization5/VIN3-like protein Neighboring gene P450 reductase 2 Neighboring gene uncharacterized protein Neighboring gene Syntaxin/t-SNARE family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203943.1
    NM_119168.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    small nuclear ribonucleoprotein F
    NP_001190872.1
    • small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1).
    NP_194751.1
    • small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1); Has 1186 Blast hits to 1186 proteins in 302 species: Archae - 341; Bacteria - 0; Metazoa - 298; Fungi - 260; Plants - 126; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14802931..14804461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119168.4 → NP_194751.1  small nuclear ribonucleoprotein F [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194751.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SUM2
      UniProtKB/TrEMBL
      A0A654FU79, Q0WT08
      Conserved Domains (1) summary
      cd01722
      Location:7 → 75
      Sm_F; Sm protein F

    2. NM_001203943.1 → NP_001190872.1  small nuclear ribonucleoprotein F [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190872.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JPK5
      Conserved Domains (1) summary
      cd01722
      Location:15 → 83
      Sm_F; Sm protein F
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUM2.1

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