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    RSH1 RELA/SPOT homolog 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828096, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RSH1
    Official Full Name
    RELA/SPOT homolog 1
    Primary source
    TAIR:AT4G02260
    Locus tag
    AT4G02260
    See related
    Araport:AT4G02260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT-RSH1; ATRSH1; RELA-SPOT HOMOLOG 1; RELA/SPOT homolog 1; RELA/SPOT HOMOLOG 1; T2H3.10; T2H3_10
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    Genomic context

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    See RSH1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    24
    Sequence:
    Chromosome: 4; NC_003075.7 (985123..991506)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 51 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene root hair specific 13 Neighboring gene sucrose synthase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Ancient Bacterial Signaling Pathway Regulates Chloroplast Function to Influence Growth and Development in Arabidopsis. Sugliani M, et al. Plant Cell, 2016 Mar. PMID 26908759, Free PMC Article
    2. AtObgC-AtRSH1 interaction may play a vital role in stress response signal transduction in Arabidopsis. Chen J, et al. Plant Physiol Biochem, 2014 Jan. PMID 24308987
    3. Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana. Mizusawa K, et al. Planta, 2008 Sep. PMID 18535838
    4. Arabidopsis RPP4 is a member of the RPP5 multigene family of TIR-NB-LRR genes and confers downy mildew resistance through multiple signalling components. van der Biezen EA, et al. Plant J, 2002 Feb. PMID 11846877
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001340369.1
    NM_116459.4
    NM_178956.4
    NM_202772.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP diphosphokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in guanosine tetraphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within leaf senescence IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within photosynthesis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RELA/SPOT homolog 1
    NP_567226.1
    • RELA/SPOT homolog 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 11651 Blast hits to 11635 proteins in 2465 species: Archae - 10; Bacteria - 7456; Metazoa - 100; Fungi - 4; Plants - 211; Viruses - 4; Other Eukaryotes - 3866 (source: NCBI BLink).
    NP_849287.2
    • RELA/SPOT homolog 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974501.1
    • RELA/SPOT homolog 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      985123..991506
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116459.4 → NP_567226.1  RELA/SPOT homolog 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567226.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DKG8
      UniProtKB/TrEMBL
      A0A654FL49
      Conserved Domains (1) summary
      COG0317
      Location:131 → 865
      SpoT; (p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription]

    2. NM_178956.4 → NP_849287.2  RELA/SPOT homolog 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849287.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JHA2, Q0WUY0, Q9M112, Q9M5P7
      UniProtKB/TrEMBL
      A0A178V5K1, A0A5S9XP59, A0A654FL49
      Conserved Domains (1) summary
      COG0317
      Location:131 → 866
      SpoT; (p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription]

    3. NM_202772.2 → NP_974501.1  RELA/SPOT homolog 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974501.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V307, A0A178V4B7, F4JHA4
      Conserved Domains (1) summary
      COG0317
      Location:131 → 661
      SpoT; (p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription]

    4. NM_001340369.1 → NP_001329795.1  RELA/SPOT homolog 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8U7, A0A654FL49
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JHA2.1
    P0DKG8.1

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