U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    btbd7 BTB (POZ) domain containing 7 [ Danio rerio (zebrafish) ]

    Gene ID: 568372, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    btbd7provided by ZNC
    Official Full Name
    BTB (POZ) domain containing 7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4477
    See related
    Ensembl:ENSDARG00000003069 AllianceGenome:ZFIN:ZDB-GENE-030131-4477
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fd08g07; si:dkeyp-55f12.1
    Summary
    Predicted to act upstream of or within morphogenesis of a branching epithelium. Orthologous to human BTBD7 (BTB domain containing 7). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See btbd7 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (27108739..27190409, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (27214859..27291330, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:dkeyp-55f12.3 Neighboring gene ubiquitin protein ligase E3 component n-recognin 7 Neighboring gene si:dkey-85n7.8 Neighboring gene proline rich membrane anchor 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within morphogenesis of a branching epithelium IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    BTB/POZ domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025551.1 → NP_001020722.1  BTB/POZ domain-containing protein 7

      See identical proteins and their annotated locations for NP_001020722.1

      Status: PROVISIONAL

      Source sequence(s)
      BX284625
      UniProtKB/TrEMBL
      A0A8M2B7G2, Q5TZA6
      Related
      ENSDARP00000013865.7, ENSDART00000020710.9
      Conserved Domains (4) summary
      smart00225
      Location:142 → 242
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:428 → 503
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:136 → 240
      BTB; BTB/POZ domain
      pfam15279
      Location:798 → 970
      SOBP; Sine oculis-binding protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      27108739..27190409 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005160586.4 → XP_005160643.1  BTB/POZ domain-containing protein 7 isoform X1

      See identical proteins and their annotated locations for XP_005160643.1

      UniProtKB/TrEMBL
      A0A8M2B7G2, Q5TZA6
      Related
      ENSDARP00000124881.1, ENSDART00000149024.2
      Conserved Domains (4) summary
      smart00225
      Location:142 → 242
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:428 → 503
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:136 → 240
      BTB; BTB/POZ domain
      pfam15279
      Location:798 → 970
      SOBP; Sine oculis-binding protein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools