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    LOC120697879 uncharacterized LOC120697879 [ Panicum virgatum (switchgrass) ]

    Gene ID: 120697879, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120697879
    Gene description
    uncharacterized LOC120697879
    Locus tag
    PVAP13_3KG295200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Panicum virgatum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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    Genomic context

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    See LOC120697879 in Genome Data Viewer
    Location:
    chromosome: 3K
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current P.virgatum_v5 (GCF_016808335.1) 3K NC_053138.1 (16065325..16071058, complement)

    Chromosome 3K - NC_053138.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120697876 Neighboring gene uncharacterized LOC120697877 Neighboring gene aspartic proteinase NANA, chloroplast-like Neighboring gene aspartic proteinase NANA, chloroplast-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053138.1 Chromosome 3K Reference P.virgatum_v5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteasome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC120697879
    Names
    ARM repeat superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.virgatum_v5 Primary Assembly

    Genomic

    1. NC_053138.1 Reference P.virgatum_v5 Primary Assembly

      Range
      16065325..16071058 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039981250.1 → XP_039837184.1  uncharacterized protein LOC120697879 isoform X2

      UniProtKB/TrEMBL
      A0A097PSC2
      Conserved Domains (1) summary
      pfam10508
      Location:81 → 334
      Proteasom_PSMB; Proteasome non-ATPase 26S subunit

    2. XM_039981249.1 → XP_039837183.1  uncharacterized protein LOC120697879 isoform X1

      UniProtKB/TrEMBL
      A0A097PSC2, A0A8T0V0T7
      Conserved Domains (1) summary
      pfam10508
      Location:81 → 334
      Proteasom_PSMB; Proteasome non-ATPase 26S subunit
    Nucleotide Protein Strain
    Heading Accession and Version

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